Problem caused by SDS
SDS : - inhibits digestion by trypsin and endoproteinase Lys-C
- HPLC – separation of peptides
e.g. Tryptic digestion of transferrin with traces of SDS

Remove SDS via :
* Extensive dialysis
* Extraction with acetone
- 450 µl acetone, 1mM HCl, 3h 20 °C
- centrifugation,
- wash with 2 x 100 µl acetone
- dry the pellets with air